How to import data

Qlucore Omics Explorer base module supports a very wide range of data and direct import of experiment data including normalization is supported for

• Aligned BAM files with RNA-seq data
• Affymetrix 3” and WT arrays.
• Agilent mRNA arrays and Agilent microRNA arrays

For Illumina data the recommended workflow is to normalize data with the GenomeStudio or BeadStudio software and then use the Data Import Wizard.

With the NGS module data with a reference genome can be imported. Supported file types include:

• bam
• vcf
• gtf

For data generated with other arrays/instruments or resulting from other type of sources, the flexible Import Wizard is very useful.

Clinical annotations are easiest imported with the Annotation Import Wizard.

This document describes the import in more detail. 

Category: How to documents