Qlucore Omics Explorer base module supports direct import of experiment data including normalization for

• Aligned BAM files with RNA-seq data
• Affymetrix 3” and WT arrays.
• Agilent mRNA arrays and Agilent microRNA arrays

For Illumina data the recommended workflow is to normalize data with the GenomeStudio or BeadStudio software and then use the Wizard in Qlucore Omics Explorer.

With the NGS module data with a reference genome can be imported. Supported file types include:

• bam
• vcf
• gtf

For data generated with other arrays/instruments or resulting from other type of sources, the flexible Import Wizard is very useful.

This document describes the import in more detail. 

Category: How to documents