Qlucore Omics Explorer base module supports a very wide range of Omics data, both from your own experiments and from public repositories such as TCGA. Data can either be normalized before import or as part of the import process. As an example it is possible to direclty import Aligned BAM files with RNA-seq data.

With the NGS module data with a reference genome can be imported. Supported file types include:

• bam
• vcf
• gtf
• txt files for gene fusions

For data generated with other arrays/instruments or resulting from other type of sources, the flexible Import Wizard is very useful.

Clinical annotations are easiest imported with the Annotation Import Wizard.

This document describes the import in more detail. 

Category: How to documents