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News

PUBLISHED ARTICLES

Scientific Computing World: Qlucore appoints sales manager to continue US expansion

BioIT World: Qlucore continues to expand in the US

ManufacturingChemistPharma: Qlucore appoints Beth Repetti as Sales Manager for the Mid Atlantic

ManufacturingChemistPharma: Qlucore Projection Score aids visualisation of large data sets

Technology Networks: Qlucore Projection Score Aids Better Visualization of Large Data Sets

GEO Connexion: Qlucore Projection Score aids better visualization of large data sets

BioIT World: Qlucore Projection Score aids better visualization of large data sets

MassBio: Qlucore Projection Score aids better visualization of large data sets

MassBio: How it Works: Advanced data analysis using Visualization

DDNEWS: Deciphering immune response

Bigdatasp: Big Data: Visualization for Advanced Big Data Analysis

Genetic Engineering and Biotechnology: Big Data: Visualization for Advanced Big Data Analysis

Technology Networks Genomics: How it Works: Advanced Data Analysis Using Visualization

KDnuggets: 5 Steps for Advanced Data Analysis using Visualization

Medicininfos: Researchers explain novel approach for analyzing diverse immune responses

Health Medicine Network: Researchers explain novel approach for analyzing diverse immune responses

NewsMedical: Researchers explain novel approach for analyzing diverse immune responses

BioPortfolio: Researchers explain novel approach for analyzing diverse immune responses

Immunology: A New Approach for Deciphering Complex Immune Responses

The Pulse: The Anatomy of Data: How the Industrial Internet Could Stop an Outbreak

ScientistLive: Studying the epigenetics of childhood cancer
MassBio: A comparison between PCA and hierarchical clustering

Journal of Lipid Research:  Multiple apolipoprotein kinetics measured in human HDL by high
resolution/accurate mass parallel reaction monitoring 

Scientist Live: Dilated cardiomyopathy

Drug Target Review: Classifying brain tumours to improve diagnoses

Lab News: Data Takes on Dopers

Scientific Computing World: Qlucore software accelerates research into heart disease

MassBio: Using induced pluripotent stem cells (iPSCs) to study molecular mechanisms in Dilated Cardiomyopathy

Technology Networks: Using iPSCs to Study Molecular Mechanisms in Dilated Cardiomyopathy

SelectScience: Using Induced Pluripotent Stem Cells (iPSCs) to Study Molecular Mechanisms in Dilated Cardiomyopathy 

KDnuggets: A comparison between PCA and hierarchical clustering

RNA-Seq Blog: A comparison between PCA and hierarchical clustering

Technology Networks: A Comparison Between PCA and Hierarchical Clustering

DDNEWS: Qlucore unveils new Omics Explorer software

DDNEWS: Qlucore unveils new Omics Explorer software

Technology Networks: Latest version of Olucore Omics Explorer Aids Data Exploration and Biomarker Discovery

ScientistLive: Aiding data exploration and biomarker discovery

RNA-Seq Blog: Latest version of Qlucore Omics Explorer aids data exploration and biomarker discovery

PharmaAsia: Qlucore Targets Malysian Biotech Market Through Genomax Partnership

Scientific Computing World: Life science software heads East

Bioportfolio: Qlucore targets the Malaysian biotech and academic research markets through new partnership with Genomax

MassBio: Qlucore targets the Malaysian biotech and academic research markets through new partnership with Genomax

GenomeWeb: Qlucore, Genomax Ink Software Distribution Agreement

GenomeWeb: Qlucore Omic Explorer 3.2

MassBio: Latest Version of Qlucore Omics Explorer Aids Data Exploration and Biomarker Discovery 

Select Science: Product News: Latest Version of Qlucore Omics Explorer Aids Data Exploration and Biomarker Discovery 

News Medical: New Qlucore Omics Explorer software aids researchers to perform deeper data analysis, biomarker discovery

PharmaVoice.com: Qlucore invests in Development and USA

Scientific Computing: Researchers Aim to Stop Blood Doping during All Competitive Sports

GenomeWeb: Qlucore to Use EUR 545K in Fundings to Hire Software-Development/Staff

MassBio: Research aims to stop ‘blood doping’ during all competitive sports

Select Science: Research Aims to Stop Blood Doping During all Competitive Sports

Scientific Computing: Machine Learning Techniques Help find Patterns in Big Data Sets 

ScientistLive: Why clustering and classification?

Select Science: Industry News: Qlucore Bioinformatics Software: Using Proteomics to Understand Cardiovascular Disease

MassBio: Qlucore announces 3 year license from Europe's largest biopharmaceutical company

Life-Sciences Europe: Qlucore Announces 3 Year License from Europe's Largest Biopharmaceutical Company. Software to help Actelion Visualize and Analyze »Big Data«"

Technology Networks: Qlucore announces 3 year license from Actelion

BioPortfolio: Qlucore announces 3 year license from Europe´s largest biopharmaceutical company

Bio-IT World: Qlucore announces 3 year license from Europe´s largest biopharmaceutical company

Scientific Computing World: Qlucore signs contract with Actelion

Scientific Computing: Omics Explorer 3.1 for Mac

Sciencebite blog: MEDICON VALLEY – SCANDINAVIA’S BEST KNOWN SECRET OF THE TECH SCENE

MassBio: Qlucore launches new version of Omics Explorer 3.1 for Mac users

MassBio: Qlucore announces partnership with TATAA Biocenter

BioPortfolio: Qlucore launches new version of Omics Explorer 3.1 for Mac users

Scientific Computing World: Qlucore release Mac version of Qlucore Omics Explorer 3.1

Kemivärlden Biotech: New version of Qlucore Omics Explorer. Read pdf. 

Scientific Computing World: Qlucore announces partnership with TATAA Biocenter

BioPortfolio: Qlucore opens first company outside Sweden in the USA

RNA-seq blog: Qlucore announces partnership with TATAA Biocenter

Genome Web: TATAA to Use Qlucore's Software for NGS Services

Technology networks: Continued Expansion for Qlucore

RNA-seq blog: Qlucore announces new version of Omics Explorer – Includes open interface to R

BioIT World: February News and Product Briefs

Scientific Computing: Omics Explorer 3.1 Advanced Data Analysis Software

Genome Web: Qlucore's Omics Explorer

Research Information: Qlucore Omics Explorer 3.1

Scientific Computing: Qlucore Omics Explorer: Analysis in an Instant 

Bio IT World: September News and Product Briefs

Select Science: Qlucore Omics Explorer Makes RNA-Seq Analysis Simple

Technology Networks: Qlucore Partners with Commugene in South Korean Market

Genomeweb: Commugene to Distribute Qlucore's Software in South Korean Market

Scientific Computing: Qlucore partnership with Commugene

Scientific Computing: Statistical Analysis Could Improve Understanding and Treatment of Different Brain Tumors

Technology Networks: Revealing Human-growth Patterns in Transcriptomic Data, May 2014

RNA-seq blog: Revealing human-growth patterns in transcriptomic data, May 2014.

Medical Device Developments: Qlucore and Nebion collaboration will benefit researchers

Scientific Computing World digital edition p 13: Qlucore helps reduce dependancy on fungicides

Scientific Computing World: Qlucore helps reduce plants dependancy on fungicides

PLOSone: Long Non-Coding RNA Expression Profiles in Hereditary Haemorrhagic Telangiectasia

AgriGenomics: Fighting to Reduce Dependence on Chemical Fungicides

PNAS: A glioma classification scheme based on coexpression modules of EGFR and PDGFRA 

Technology Networks: Qlucore, Nebion Collaborate

Genomeweb: Qlucore, Nebion to Promote Each  Other's Data Analysis Products

Scientific Computing World Newsline/Bioinformatics: Qlucore Omics Explorer 3.0 

Scientific Computing World: Qlucore Omics Explorer 3.0

Drug Discovery World: Interpreting leukemia proteomics data

European Biopharmaceutical Review: New Generation

Scientific Computing World: Too big for its boots

GenomeWeb: People in the news

FierceBiotechIT: qlucore corrals EU funding for hepatitis C software 

Genomeweb: Qlucore to Develop Hepatitis C Mobile App for Personalized Medicine Consortium

Technology Networks: Using Qlucore Omics Explorer for Interpreting Leukemia Proteomics Data 

Scientistlive: Flexibility and speedy data analysis key for omics technologies

Proteomics: Qlucore Receives European Funding That will Benefit Personalized Medicine

Sydsvenskan: Qlucore får EU-pengar

Genomeweb: Qlucore Gets Funding to Develop Algorithms for PoC HCV Consortium

Scientific Computing World: p 17-19 / Stats for the million / Five Steps to Eden

Scientific Computing World:  p 4 / Data Analysis replacing Animal Testing in EU

Scientific Computing World: Grant advances Qlucore's NGS vision

Eurolab: Powerful data analysis improves gene expresson technology

Scientist Live: Powerful data analysis improves gene expression technology

LifeScienceSweden: Forskarvärlden drunknar (The Research Community is drowning)

SpecialChem: EU-funded Project "Sens-it-iv" Develops In-vitro Method to Replace Animal Testing

Technology Networks: Qlucore Receives R&D Funding

Genomeweb: Qlucore to Use Swedish Government Grant to Develop NGS Capabilities for Omics..

Eurolab: Flexibility and speedy data analysis key for omics technologies

Cancer Discovery: Succinate dehydrogenase mutation underlies global epigenomic divergence in gastrointestinal stromal tumor

Pharmagenomics: Pharmacogenomics of insulin-like growth factor-I generation during GH treatment in children with GH deficiency or Turner syndrome.

Technology Networks: Qlucore Targets Academic and Commercial Biotech, Life Science Markets with Novo Newton Scientific Ltd

Laboratory News: Seeing is believing

Genetic Engineering and Biotechnology News: Data Analysis Software

PLOs One: The Simian Immunodeficiency Virus Targets Central Cell Cycle Functions through Transcriptional Repression In vivo  

Scientific Computing World: Visualisation application leads to meningioma discovery

European BioPharmaceutical Review: Analyse This

Pharma: Making sense of genetic data. Read pdf.

Bionity.com: Researchers successfully develop animal free methods for testing chemical compounds for allergens

Medical News Today: Researchers Successfully Develop Animal Free Methods For Testing Chemical
Compounds For Allergens, Ahead Of The EU Ban

Cosmetics design-europe.com: Lund university develops test alternatives thanks to stunning software

Chemeurope.com: Animal Free Methods for Testing Chemical Compunds for allergens developed

Technology Networks: Animal Free Methods for Testing Chemical Compounds for allergens developed

Bionity.com: Qlucore targets academic and commercial biotech life science markets with Novo Newton

Labmate Online: Vital work in cancer research

Labmate Online: Qlucore targets academic and commercial biotech, life science markets

Drug Discovery and Development article about version 2.3

Labmate Online article about Qlucore in Japan

Scientific Computing World article about reducing animal testing.

European BioPharmaceutical Review article. Read pdf.

Manufacturing Chemist article. Read pdf.

Labmate Online: Qlucore enters co-operation with SinoGenoMax

Genomeweb article on Qlucore expansion to China.

BBC News article on software for gene expression analysis

Chemsitry and Industry article on animal testing

Laboratory News article about managing data overload

Drug Discovery & Development article about PCA.

Drug Discovery & Development article about data analyzis.

Laboratory News article about big data analyzis.

Laboratory News Network on Qlucore Omics Explorer 2.0

Laboratory Talk article on PCA

Scientific Computing World on Qlucore Omics Explorer.

Computer Sweden (Swe) article on speeding up data analysis

CASE STUDIES

Collaboration improves understanding of Hepatitis C by Darragh Duffy,  immunologist in the laboratory of Immunobiology of Dendritic Cells at Institut Pasteur/Inserm in France. Link 
Scientists fighting to reduce dependence on chemical fungicides,  by the Institution of Plant Protection Biology at the Swedish Unviersity of Agricultural Scinences, Dr Erik Alexandersson, February 2014 Link 
Using Qlucore Omics Explorer for interpreting leukemia proteomics data by researcher Steven Kornblau, Professor of Medicine in the Department of Leukemia & Department of Stem Cell Transplantation and Cellular Therapy at UT MD Anderson Cancer Center in Houston, Texas, US.Link 
Cancer study regarding cancer, meningioma, from Toledo, SpainLink 
Transcriptomics data and biomarkers from The National Institute for Public Health and the
Environment, the Netherlands.
Link 
Leukaemia and gene expression, from Cincinnati Children's Hospital Medical Center, USALink 
Ole Ammerpohl at University Medical Center Schleswig-HolsteinLink 
Helena Carén at The Sahlgrenska AcademyLink 

 

2017-04-05

Pathways and GSEA Workbench. April Newsletter

Functional analysis

 

With Qlucore Omics Explorer it is easy to incorporate functional information such as pathways, gene sets and other structured lists of biologically functional information in your analysis.

Pathway analysis, or gene set analysis, is a collective name for methods aimed at statistical analysis of a collection of genes, rather than single genes. Typically, genes are grouped together in a collection if they have something in common, for example, if they are part of the same biological pathway, or if they are all located close to each other along the genome. Given such a collection of genes, gene set analysis is often used to examine whether the expression levels of the genes in the collection are "collectively" significantly associated with a given covariate (for example, whether the genes in the collection are generally differentially expressed between two conditions).
How to undertake pathway and gene set analysis in Qlucore Omics Explorer is by using the integrated Gene Set Enrichment Analysis (GSEA) workbench. Close integration with all other functionality in the program and optimized performance provide extensive benefits over stand-alone solutions.
To begin the functional analysis, two components are needed: a data set with measurements of the features (variables) and the functional information such as pathways. Functional information is often acquired from open online repositories such as MSigDB and Reactome.
In Qlucore Omics Explorer you perform the GSEA analysis by starting “New GSEA Workbench” from the View menu, selecting your ranking criteria and pressing “Run”. It couldn’t be easier!
Login to read more about pathway analysis with Qlucore Omics Explorer in the “How to Do Pathway analysis” document where you will also find recorded webinars of various topics.
 
WEBINAR:
Introduction to Qlucore Omics Explorer 
May 16th 08.00 CDT
09.00 EDT
14:00 BST
15:00 CEST
15:00 GMT (+2)
 
BOOK WEBINAR
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Contact us

Carl-Johan Ivarsson
press@qlucore.com
+46 46 286 3110

Chaz Brooks / Alison Scarrott
brookscomm 
chaz@brookscomm.com
www.brookscomm.com
+44 (0)1483 537 890

 

PUBLISHED ARTICLES

RECENT PRESS RELEASES

Qlucore Projection Score aids better visualization of large data sets, Feb 2017
Qlucore continues to expand in the US, Feb 2017
A new approach for deciphering complex immune responses, 2016-09-13
Further expansion in US for Qlucore, 2016-05-11
Qlucore founder co-leading course at FOCIS, 2016-05-11
Qlucore targets the Malaysian biotech and academic research
markets through new partnership with Genomax, 2016-01-13
Latest version of Qlucore Omics Explorer aids data exploration and biomarker discovery, 2016-01-11
Qlucore invests in development and USA, 2015-11-18
Qlucore announces 3 year license from Europe's largest biopharmaceutical, company, 2015-07-13 
Qlucore launches new version of Omics Explorer 3.1 for Mac users
Qlucore announces partnership with TATAA Biocenter, 2015-03-09
Qlucore announces new version of Omics Explorer, 2015-02-02
Continued expansion for Qlucore, 2015-01-28
Qlucore opens first company outside Sweden in the USA, 2014-12-17
Make New Discoveries: Qlucore presents an educational Bioinformatics webinar, 2014-09-26
Qlucore signs agent agreement with Commugene, 2014-09-16
Qlucore Omics Explorer makes RNA-seq analysis simple, 2014-08-22
Qlucore and Nebion collaboration will benefit researchers, 2014-02-06
Latest release of Qlucore software helps researchers reach beyond the current experiment, 2014-01-13
Qlucore announces aid to better visualisations of large data sets, 2013-12-10
Qlucore recruits for the future, 2013-09-23
Qlucore receives European funding as part of consortium project that will benefit Personalized medicine, 2013-09-04
Qlucore rustar för expansion,  2013-09-04
New research aims to stop 'blood doping', 2013-06-19
Swedish government gives its backing to Qlucore for NGS solution, 2013-04-29
Animal free methods for testing, 2013-04t
Qlucore establish alliance with Novo Newton Scientific, 2013-01-14
Qlucore raises new capital
Qlucore Omics Explorer 2.3 benefits
Qlucore Omics Explorer 2.3
Qlucore founder elected ECMI president
Qlucore targets the Japanese market