Qlucore Omics Explorer base module supports many data file formats:

• Aligned BAM files (RNA-seq)

• 10X Genomics Cell Ranger output

• ThermoFisher (Affymetrix) CEL files

• Arbitrary count data using the import Wizard (*.txt, *.tsv, *.csv)

• Arbitrary normalized data using the import Wizard (*.txt, *.tsv, *.csv)

• Affymetrix Probe Set Files (*.chp)

• Agilent text files (*.txt)

• Agilent Gene View files (*.txt)

• Qlucore Data files (*.gedata)

• Simple Data files (*.txt)

• BioArray Software Environment files (*.base)

• Geo Data Sets (*.soft and *.soft.gz)

• Geo Series Matrix (*.txt and *.txt.gz)

• R data frame

With the NGS module support for the below files are added:

• bam files
• vcf files
• bed files
• gtf files
• txt files for gene fusions

In addition to the data file formats listed above it is possible to import annotations (clinical information). The annotations should be stored in a .txt, .tsv, csv or .chip file. The Annotation Import Wizard makes it straightforward to import data from files with many different layouts.

For users who also use R it is possible to export data to an R data frame and an R data frame can also be read.

Read about all features in Qlucore Omics Explorer.