
Data import
Qlucore supports a wide variety of data and file formats, see list below. Great flexibility is provided with the Import Wizard.
Qlucore Omics Explorer base module supports many data file formats:
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Aligned BAM files (RNA-seq)
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10X Genomics Cell Ranger output
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ThermoFisher (Affymetrix) CEL files
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Arbitrary count data using the import Wizard (*.txt, *.tsv, *.csv)
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Arbitrary normalized data using the import Wizard (*.txt, *.tsv, *.csv)
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Affymetrix Probe Set Files (*.chp)
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Agilent text files (*.txt)
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Agilent Gene View files (*.txt)
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Qlucore Data files (*.gedata)
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Simple Data files (*.txt)
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BioArray Software Environment files (*.base)
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Geo Data Sets (*.soft and *.soft.gz)
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Geo Series Matrix (*.txt and *.txt.gz)
- R data frame
With the NGS module support for the below files are added:
- bam files
- vcf files
- bed files
- gtf files
- txt files for gene fusions
In addition to the data file formats listed above it is possible to import annotations (clinical information). The annotations should be stored in a .txt, .tsv, csv or .chip file. The Annotation Import Wizard makes it straightforward to import data from files with many different layouts.
For users who also use R it is possible to export data to an R data frame and an R data frame can also be read.
Read about all features in Qlucore Omics Explorer.
Qlucore Insights and Qlucore Diagnostics
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Aligned BAM files (RNA-seq)
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Supported fusion callers
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Fusion-Catcher
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STAR-Fusion
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Arriba
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