Data import

Qlucore supports a wide variety of data and file formats, see list below. Great flexibility is provided with the Import Wizard.

Qlucore Omics Explorer base module supports many data file formats:

  • Aligned BAM files (RNA-seq)

  • 10X Genomics Cell Ranger output

  • ThermoFisher (Affymetrix) CEL files

  • Arbitrary count data using the import Wizard (*.txt, *.tsv, *.csv)

  • Arbitrary normalized data using the import Wizard (*.txt, *.tsv, *.csv)

  • Affymetrix Probe Set Files (*.chp)

  • Agilent text files (*.txt)

  • Agilent Gene View files (*.txt)

  • Qlucore Data files (*.gedata)

  • Simple Data files (*.txt)

  • BioArray Software Environment files (*.base)

  • Geo Data Sets (*.soft and *.soft.gz)

  • Geo Series Matrix (*.txt and *.txt.gz)

  • R data frame

With the NGS module support for the below files are added:

  • bam files
  • vcf files
  • bed files
  • gtf files
  • txt files for gene fusions

In addition to the data file formats listed above it is possible to import annotations (clinical information). The annotations should be stored in a .txt, .tsv, csv or .chip file. The Annotation Import Wizard makes it straightforward to import data from files with many different layouts.

For users who also use R it is possible to export data to an R data frame and an R data frame can also be read.

Read about all features in Qlucore Omics Explorer

Qlucore Insights and Qlucore Diagnostics


  • Aligned BAM files (RNA-seq)

  • Supported fusion callers 

    • Fusion-Catcher 

    • STAR-Fusion 

    • Arriba

QI and QD

Short introduction video

Watch here

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