Qlucore

Videos

Investigating the Molecular Mechanism of T-cell Infiltration and Survival in Breast Cancer

Webinar

Tumor cells can be detected and eliminated by the immune system, mediated by cells such as natural killer cells, dendritic cells and CD4+ T-cells. To exert their effect, immune cells...

Qlucore Insights

Introduction

A product transforming clinical data into new insights to aid clinicians and lab personnel in their work with precision medicine. The program supports whole transcriptome RNA-seq data making it possible...

Key Opinion Leader Interview - using NGS and RNA-seq in clinical cancer diagnostics

Interview with Thoas Fioretos, Professor in Clinical Genetics, Lund University in Sweden. In the interview questions about using RNA seq in clinical diagnostics and meeting future needs in precision diagnostics...

Qlucore Diagnostics

Using RNA-seq for diagnosis of acute lymphoblastic leukemia

Short interview with Key Opinion Leader Thoas Fioretos, Professor in Clinical Genetics, Lund University, Sweden about the benefits using RNA seq for diagnosis of Acute lymphoblastic leukemia (ALL). The great...

Benefits of using RNA-seq for clinical cancer diagnostics

Short interview with Key Opinion Leader Thoas Fioretos, Professor in Clinical Genetics, Lund University, Sweden about major benefits of using RNA-seq in the clinical setting. Improved diagnostics workflow using whole...

TCGA data import

Import TCGA data

Video Tutorial

This tutorial shows how to import a data set from TCGA. The import is done using a template. Its possible to create your own templates and add them to the...

Import normalized data

Video Tutorial

​This tutorial shows how to import normalized data set using the wizard. Using the wizard you can import normalized data as well as annotations. The wizard can handle a wide...

RNA seq

How to import RNA-seq BAM files

Video Tutorial

BAM files can easily be imported to Qlucore Omics Explorer. This tutorial explains the steps, if importing individual files or a whole folder, the data processing and then the report...

Gain more insight combining Qlucore Omics Explorer with MetaCore

Introduction

By performing statistical analysis in Qlucore Omics Explorer, you can quickly identify a list of genes, proteins etc with significant differences between relevant disease or treatment groups. To further investigate...

Interactive Genome Browser in the NGS module

Introduction

The NGS module in Qlucore Omics Explorer enables exploration and analysis of sequencing data such as DNA-seq , RNA-seq and ChIP seq data. The module includes a genome browser supporting...

GSEA

Identify pathways using GSEA

Introduction

Gene set enrichment analysis is an excellent method to quickly identify sets of genes such as pathways and other lists of variables that are enriched in a data set. Qlucore...

Quick workflow to analyze TCGA data

Introduction

The cancer genome atlas, TCGA, is the world's largest collection of genomic data and can easily be imported into Qlucore Omics Explorer. Once imported you can use all available functionality...

PCA

Principal Component Analysis and fast visualization

Introduction

Principal component analysis is a great method to reduce noise and quickly discover underlying patterns in a large data set. Qlucore Omics Explorer generates 3D PCA plots on the fly...

demo QOE

Qlucore Omics Explorer Demo

Introduction

With Qlucore Omics Explorer all analysis is instant. The program includes a range of powerful tools and statistical filters but is still very easy to use and works on many...

Short intro Qlucore Omics Explorer

Introduction

Qlucore Omics Explorer makes data analysis easier and faster - and improves the exploration and interpretation of complex multi omics data on both PC and Mac. By combining instant visualization...

TCGA data

Import and analyze public data from SRA, GEO and TCGA in Qlucore Omics Explorer

Webinar

Many new studies include RNA sequencing data. In this webinar we will go through the process of downloading and importing SRA data using the SRA toolkit, how to use an...

Statistics and Biomarker Workbench

Statistics and Biomarker Workbench

Webinar

In this webinar we will present new statistical methods and options that have been added to the statistics dialogue. We will also show how the new Biomarker Workbench makes it...

Qlucore Diagnostics

Qlucore Diagnostics - New software for precision diagnostics

Introduction

This video gives a short introduction to Qlucore Diagnostics, a unique software that provides a solution building on the requirements of the future. Qlucore Diagnostics enables RNA-seq based precision diagnostics...

Biomarker Workbench for set up of multiple statistical tests

Introduction

The Biomarker workbench is optimized for drug development and biomarker discovery and it makes advanced set up of statistical analysis easy and accessible for the user. This video shows how to...

Easy and fast ChIP-seq

Introduction

Performing peak analysis is quick and easy in Qlucore Omics Explorer. With the interactive Genome Browser, you add filters to the ChIP-seq data to quickly find locations of the peaks for...

Gene Fusion

Analyze gene fusions in Gene Fusion Workbench

Introduction

The gene fusion analysis support in Qlucore Omics Explorer enables fast and easy analysis and visualization of detected gene fusions in a research setting. The fusions can be thoroughly examined in the genome...

Qlucore Omics Explorer 3.7

Introduction

The new version adds functionality for enhanced biomarker discovery, easier analysis, and further improvements in visualization. This video focus on the new Biomarker Workbench and the ChIP-seq functionality. Other new...

Make new discoveries in your data using different plot types

Webinar

The webinar shows how you can interactively work with your data to make new discoveries using PCA plots with networks, heatmaps with hierarchical clustering, kmeans++ clustering and t-SNE plots. We...

RNA-seq and Single cell data analysis

Webinar

In this webinar we will show examples on how to work with RNA-seq as well as Single cell data. We will use different public datasets from various sources like 10X...

proteomics data sets

Proteomics and Metabolomics data analysis

Webinar

The webinar shows examples on how to work with Proteomics as well as Metabolomics data. We will use different public datasets and visualize and interactively work with data using various...

Pathway analysis with Gene Set Enrichment Analysis (GSEA)

Webinar

How to use Gene Set Enrichment Analysis (GSEA) to analyze datasets using functional information such as pathways in Qlucore Omics Explorer. The GSEA workbench is fully integrated in Qlucore Omics...

Kevin Wei

User testimonial: Brigham and Women´s Hospital in Boston, USA

Webinar

Watch the video to learn what Dr. Kevin Wei, Instructor in Medicine at Brigham and Women´s Hospital, Boston, USA, say about using Qlucore Omics Explorer.

Qlucore Omics Explorer

Value using Qlucore Omics Explorer

Introduction

Watch the video to learn more about the benefits of using Qlucore. Listen how MD, PhD, David Gisselsson Nord Research Group Leader, Principal Investigator, Lund University, Sweden, are using Qlucore...

Qlucore webinar

Strategies to prioritize and filter our results

Webinar

Big data comes with big results, especially when you are in a discovery mode. How do you filter 10,000 findings for meaningful and actionable ones? We will look at different...

Correlation - how to identify and visualize correlated variables.

Webinar

The webinar focus on how to work with variable correlation and some features related to that. E.g. finding correlated variables, visualizations in variable PCA plots, scatter plots, line plots, searching...

Import RNA-seq data

Introduction

1 minute video. There are several ways to import RNA-seq data into Qlucore Omics Explorer. Watch this brief introduction on how to perform direct import of BAM files, and how...

Introduction Box plots

Introduction

1 minute video. Learn how to use the box plot and some of the many configuration options it has in Qlucore Omics Explorer. It is easy and fast to set-up...

Qlucore plots

Create plots easily

Webinar

The webinar shows how you can interactively work with your data utilizing the wide range of plots available in Qlucore Omics Explorer, also introducing Venn diagrams, Volcano plots, Box plots...

blue and green gradient with bubbles

Easy access to different type of public data

Webinar

In this webinar we will show the inbuilt methods for easy access and download to public data. The program offers several ways to get access to data easily, such as...

Genomic Analysis

Webinar

In this webinar we demonstrate how to work with the NGS Project Manager and the integrated Genome browser. We look at Variant Calling, visualizing samples and reference information (using project...

Explore data from chronic liver disease and find other related public datasets

Webinar

Qlucore Omics Explorer and Genevestigator are two complementary tools/services, which when used together provides the end user with increased value and analysis options. This webinar demonstrates an indepth analysis of...

Qlucore PLots

How to set-up and configure different plots

Webinar

In this webinar we will go through how to set-up and configure plots. Single plots and synchronized plots will be presented. Details about preparing a plot for publication will also...

Correlation, lists, 2D plots and coloring

Webinar

Learn how to use the correlation tool in Qlucore Omics Explorer, how to generate lists in different ways and how to compare lists in Venn Diagrams. Qlucore offers a number...

Qlucore Omics Explorer

Introduction to Qlucore Omics Explorer

Webinar

Quick and easy to use bioinformatics analysis software. Learn how to easy analyze and visualize your data using Qlucore Omics Explorer. Qlucore is a program aimed for biologists as well...

clustering

Introduction to kmeans++ clustering

Introduction

1-min video. Fast and easy to use bioinformatics analysis software. This video introduces kmeans++ clustering and silhouette plot functionality. With Qlucore Omics Explorer you analyze Omics and NGS data sets...

templates

Introduction to Templates

Introduction

1-min video. Qlucore Omics Explorer includes a powerful functionality called Templates. These Templates are very powerful and easy to use. With very few key clicks, you can run a complete...

t-sne

Introduction to t-SNE plot.

Introduction

1-min video.Short introduction showing how Qlucore Omics Explorer provides easy to use t-SNE plots and the tools you need for single Cell analysis. The t-SNE plot is as easy to...

Venn Diagram

Introduction to the Venn diagram plot and the Set tool

Introduction

1-min video. Introduction to the Venn diagram as an excellent tool to visualize overlap and interaction between lists. It is easy to set up and configure the plot. In combination...

Explore and find patterns in your data

Introduction

Qlucore includes powerful methods to quickly explore large data sets. In this video we demonstrate how the fast generation of PCA plots in combination with the projection score metric allows...

heatmap

Heatmaps for instant visualization

Introduction

1 min video. Short introduction to Heatmaps. Qlucore provides super-fast and easy ways to generate heatmaps and configure them to your liking. See how the heatmap changes instantly if you...

finding variables

T-test and fold change and finding interesting variables in our data

Introduction

Short introduction to Qlucore and how you can find significant variables using the inbuilt powerful statistical methods - with just a few mouse clicks. Watch this video to see for...

Log point

How do I keep track of my analysis?

Webinar

Keeping track of analysis. We often get the question “How do I best keep track of my analysis?” In this webinar we will demonstrate the tools that are available in...

What is the dimension of a data set?

Webinar

We will describe what the dimension of a data set is and how to know if the first 3 dimensions of the PCA plot is enough to capture the complexity...

Single cell

Single cell RNAseq

Webinar

Qlucore Omics Explorer includes a set of features directed specifically towards single-cell RNA-seq analysis. These features are t-SNE plots, better quality control and data filtering and subsampling of data sets...

NGS

Focus Next-Generation Sequencing

Webinar

Qlucore Omics Explorer offers a set of NGS focused tools, centered around the Genome Browser. This webinar will show the Genome Browser, how it is used, and how it can...

Introduction New Templates in Qlucore Omics Explorer 3.5. PART 2 of 2

Webinar

Templates is a new feature set added in Qlucore Omics Explorer 3.5 which allow you to create your own scripted workflows for the software. This webinar will show that Templates...

Features Templates

Introduction New Templates in Qlucore Omics Explorer 3.5 - PART 1 of 2

Webinar

Templates is a new feature set added in Qlucore Omics Explorer 3.5 which allows you to create your own scripted work-flows for the software. This webinar will show what Templates...

special functionality

Specific functionality in Qlucore Omics Explorer

Webinar

In this webinar we are highlighting specific and useful functions such as t-sne plots, variable pre-filtering and the annotation wizard.

visualize

Maximize the Impact of Visualization-driven Omics Data Analysis

Webinar

The webinar illustrates visualization-driven data analysis with a live software demonstration, share insights driven from in-depth visual data inspection.

Data-driven identification and exploration of public transcriptomic studies

Webinar

Qlucore Omics Explorer and Genevestigator are two complementary tools/services which when used together provide the end user with increased value and analysis options. This webinar shows a use case demonstration...

How to use the R interface

Webinar

A webinar on how to use the R interface.

Analyze RNA-seq data

Webinar

Analsyis of RNA seq data in Qlucore. Presented by Charlotte Soneson.

Protections score

Projection Score in Qlucore Omics Explorer

Webinar

Learn how to use the Qlucore tool Projection Score in data exploration. See also White Paper - Projection Score Projection Score - Hypotheses generation and new findings

finding clusters

Finding Clusters and Structures in Data

Webinar

A webinar introducing data exploration tools to finding structure and clusters in data. The demonstration is based on a publicly available data set easily downloaded by the inbuilt GEO download...

Add annotations to a data set

Video Tutorial

5 min video. Learn how to import variable and sample annotations.

Working with variable lists

Video Tutorial

5 min video. Learn how to create, update and work with variable lists.

Identify discriminating variables

Video Tutorial

5 min video. Learn how to use Qlucore Omics Explorer to identify discriminating variables (i.e. differential expressed genes), visualize, and save your results. Different statistical tests are introduced.

Import data with the Wizard

Video Tutorial

5 min video. Detailed instruction video on how to import data using the wizard.

Loading Data

Video Tutorial

Learn how to import different types of data into Qlucore Omics Explorer.

Getting started

Video Tutorial

Introduction to Qlucore Omics Explorer and some of the basic functionalities.

Short introduction video

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