ChIP-seq and ATAC-seq analysis

Easy and flexible bioinformatics software for ChIP-seq and ATAC-seq data analysis

Qlucore Omics Explorer allows for comprehensive analysis of peak data such as ChIP-seq and ATAC-seq. The program includes full work-flow support - from normalization to data export.  The main components of the peak analysis are all included and easy accessible. The processing includes

Peak detection
Consensus peaks
Count matrix generation.

The included Genome Browser includes flexible visualizations and powerful filtering options, making it easy to find interesting features.

Analyze ChIP-seq and ATAC-seq data

The peak analysis support in Qlucore Omics Explorer allows for comprehensive analysis of peak data such as ChIP-seq and ATAC-seq. The main components of the peak analysis processing are peak detection, consensus peaks and count matrix generation. The genome browser in the NGS module includes powerful filtering options for the peak analysis, making it easy to find interesting features. The browser allows the user to annotate peaks and export the results as a bed file. If the experiment also includes RNA-seq data, it is possible to generate a count matrix for RNA-seq and swap between the RNA-seq and ChIP/ATAC-seq count matrices during the analysis.

Key functionalities

Full work-flow support. From normalization to data export. 
Peak detection and visualization of detected peaks in dedicated tracks.
Peak variable list with peak information automatically created.
Visualizations (Genome browser, line plots, heatmaps, pie chart). 
Use the List tool to select Peaks and add them to a variable list that can be saved.
Option to save data as a BED file.